PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016704
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 244aa    MW: 26591 Da    PI: 9.2748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016704genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.9e-19553153
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
               ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  +
  Cla016704  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAVLM 53
               59*******9.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.55E-33565No hitNo description
PROSITE profilePS5103221.865663IPR001471AP2/ERF domain
SMARTSM003801.5E-38669IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-20665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-33665IPR001471AP2/ERF domain
PfamPF008471.0E-11650IPR001471AP2/ERF domain
PRINTSPR003671.6E-10718IPR001471AP2/ERF domain
PRINTSPR003671.6E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVPSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDQAA VLMSGRNAKT  60
NFPMSQTAAP ELEKPDKNNN ITSPKGLSEI LHAKLRKCSK APSPSMTCLR LDTENSHIGV  120
WQKRAGQRSD SSWVMTVHLG KTNSASATSA AAGAASASGG DDDGGQLRKN KKSGCFTGLI  180
SSEGGAGALM AASGTHMKNL EMDEEEERIA LQMIEELLSR NCGNPSEIIQ VQDHDQGKQP  240
FYPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16564464ATERF1
3gcc_A3e-16564464ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818472e-96LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132592e-96LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648682.11e-128PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI338e-71WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0A0LKZ71e-128A0A0A0LKZ7_CUCSA; Uncharacterized protein
STRINGPOPTR_0006s06870.15e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-59ERF family protein